Profiling of Protein Degraders in Cultures of Human Gut Microbiota
Por:
Amaretti A, Gozzoli C, Simone M, Raimondi S, Righini L, Pérez-Brocal V, García-López R, Moya A and Rossi M
Publicada:
15 nov 2019
Ahead of Print:
15 nov 2019
Resumen:
Unabsorbed proteins reach the colon and are fermented by the microbiota, yielding a variety of harmful metabolites. In the present study, a 16S rRNA gene survey identified the bacterial taxa flourishing in 11 batch fermentations with proteins and peptones as the sole fermentable substrates, inoculated with the feces of six healthy adults. Organic acids, ammonia, and indole resulting from protein breakdown and fermentation accumulated in all of the cultures. Analysis of differential abundances among time-points identified Enterobacteriaceae, Burkholderiaceae, and Desulfovibrionaceae (including Esherichia-Shigella, Sutterella, Parasutterella, and Bilophila) among the bacteria that especially in the cultures with low inoculation load. Lachnospiraceae and Ruminococcaceae also encompassed many taxa that significantly expanded, mainly in cultures inoculated with high inoculation load, and showed the strongest correlation with the production of ammonium, indole, and p-cresol. Anaerotruncus, Dorea, Oscillibacter, Eubacterium oxidoreducens, Lachnoclostridium, Paeniclostridium, and Rombutsia were among them. Other Firmicutes (e.g., Roseburia, Ruminococcus, Lachnospira, Dialister, Erysipelotrichaceae, and Streptococcaceae) and many Bacteroidetes (e.g., Barnesiellaceae, Prevotellaceae, and Rickenelliaceae) decreased. Sequences attributed to Bacteroides, unresolved at the level of species, presented opposite contributions, resulting in no significant changes in the genus. This study sheds light on the multitude of bacterial taxa putatively participating in protein catabolism in the colon. Protein fermentation was confirmed as unfavorable to health, due to both the production of toxic metabolites and the blooming of opportunistic pathogens and pro-inflammatory bacteria.
Filiaciones:
Amaretti A:
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
BIOGEST-SITEIA, University of Modena and Reggio Emilia, Modena, Italy
Gozzoli C:
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
Simone M:
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
Raimondi S:
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
Righini L:
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
:
Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencian Community (FISABIO-Public Health), Valencia, Spain
CIBER in Epidemiology and Public Health (CIBERESP), Madrid, Spain
:
Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencian Community (FISABIO-Public Health), Valencia, Spain
CIBER in Epidemiology and Public Health (CIBERESP), Madrid, Spain
:
Area of Genomics and Health, Foundation for the Promotion of Sanitary and Biomedical Research of Valencian Community (FISABIO-Public Health), Valencia, Spain
CIBER in Epidemiology and Public Health (CIBERESP), Madrid, Spain
Institute for Integrative Systems Biology (I2SysBio), University of Valencia, Spanish National Research Council (CSIC-UVEG), Valencia, Spain
Rossi M:
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy
BIOGEST-SITEIA, University of Modena and Reggio Emilia, Modena, Italy
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